Popular pseudotime inference methods—TSCAN , Slingshot , Monocle , and Monocle2 —include a built-in functionality for identifying DE genes after pseudotime inference. Slingshot cell lineage and pseudotime inference for シングルセルRNA Calculate pseudotime and lineages with Slingshot. Dimensionality reduction, for example, helps in … 5. Various microarray platforms and statistical approaches can be used to identify genes that might serve as pr … Gene set enrichment analysis and ingenuity pathway analysis of metastatic … In addition to Slingshot’s core methodological components described above for lineage and pseudotime inference, we note the importance of upstream analysis choices. b Heatmap showing the relative expression of TFs displaying significant changes (P ≤ 1E−5) along the pseudotime axis of each lineage. Slingshot: Trajectory Inference for Single-Cell Data Monocle 3 includes an interactive function to select cells as the root nodes in the … Slingshot: cell lineage and pseudotime inference for single-cell ... slingshot package - RDocumentation pseudotime pseudotime
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